PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016484291.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 264aa    MW: 30850.9 Da    PI: 5.0945
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016484291.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.97.4e-15442341
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    i+++  r+ tf kR++ ++KK +ELS+LCd+++++ii+ 
  XP_016484291.1  4 IQDHKTRKSTFQKRKACLIKKISELSILCDIKACMIIYE 42
                    889999*******************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.09E-17186IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-8152IPR002100Transcription factor, MADS-box
CDDcd002666.60E-18177No hitNo description
PROSITE profilePS5006613.89145IPR002100Transcription factor, MADS-box
PfamPF003191.4E-14445IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MELIQDHKTR KSTFQKRKAC LIKKISELSI LCDIKACMII YEGNNCEEIW PNDPNEVQEL  60
INLYKNQPIE DRSKRENSLC SFLENEKKKA EIKMAKLKTK IKTEKYPTWD SRFNYLSEKE  120
LRNLAGVLEK KMENAKGKSE FLKSSRNINQ EIWDYPELMD NFNQSNPQPI SYMDNQFFQE  180
LTADFDQVIS STDHVNSMGI LDNGQLSVGD YQFGNSDYIK IEAENWLVNN GIIGSSSRMQ  240
PMELNQYYPF ICNGSTQMPY GYFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016484291.10.0PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLK4D6Y41e-76K4D6Y4_SOLLC; Uncharacterized protein
TrEMBLM1CN257e-76M1CN25_SOLTU; Uncharacterized protein
STRINGSolyc11g020320.1.13e-76(Solanum lycopersicum)
STRINGPGSC0003DMT4000710012e-75(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-16M-type_MADS family protein